Atomic structure
IB syllabus topic Structure 1.2 — The nuclear atom
Atomic structure describes how an atom is built from protons, neutrons and electrons; this revision note covers the nuclear model of the atom, atomic and mass numbers, ions, isotopes and relative atomic mass, and (HL) how mass spectrometry is used to find isotopic abundances and relative atomic mass.
Part of IB Chemistry (2025-2030 syllabus) — Standard and Higher Level.
Items marked HL are Higher Level only — SL students can skip them.
Showing Standard Level content only — Higher Level items are hidden.
Key points
- An atom has a tiny, dense, positively charged nucleus containing protons and neutrons, surrounded by electrons in the much larger space around it; almost all the mass is in the nucleus.
- Relative charges are +1 (proton), 0 (neutron), -1 (electron); relative masses are 1, 1 and about 1/1836 (negligible) respectively, so the mass number counts only protons + neutrons.
- The atomic (proton) number Z identifies the element and equals the number of protons; the mass number A equals protons + neutrons, so neutrons = A - Z.
- A neutral atom has equal numbers of protons and electrons; an ion forms by gaining electrons (negative anion) or losing electrons (positive cation) - the number of protons never changes.
- Isotopes are atoms of the same element (same Z) with different numbers of neutrons (different A); they have identical chemical properties but slightly different physical properties such as density and rate of diffusion.
- Relative atomic mass Ar is the weighted mean mass of the isotopes of an element, on the scale where one carbon-12 atom is exactly 12; it is a ratio and has no units.
- HL(HL) A mass spectrometer ionises a sample, separates ions by their mass-to-charge ratio (m/z), and records the relative abundance of each isotope, which is then used to calculate Ar.
Subtopic by subtopic
Protons, neutrons and electrons
Every atom is made of three subatomic particles. The protons and neutrons sit together in a tiny central nucleus; the electrons occupy the much larger volume around it.
| Particle | Relative charge | Relative mass |
|---|---|---|
| Proton | | |
| Neutron | | |
| Electron | | (negligible) |
Key ideas:
- The nucleus is positively charged (protons) and holds almost all the mass, yet it is extremely small compared with the whole atom - most of an atom is empty space.
- In a neutral atom, protons = electrons, so the charges cancel.
- The atomic (proton) number is the number of protons; it defines the element.
- The mass number counts the nucleons (protons + neutrons), so .
Nuclide symbol notation places on top and on the bottom, e.g. has protons, electrons and neutrons.
Ions form by transferring electrons: gaining electrons makes a negative anion (e.g. has one extra electron), losing electrons makes a positive cation (e.g. has one fewer). The proton number never changes when an ion forms - only the electron count does.
Isotopes and relative atomic mass
Isotopes are atoms of the same element (same , same number of protons and electrons) but with different numbers of neutrons, so they have different mass numbers .
For example, chlorine exists as and : both have protons, but and neutrons respectively.
Consequences:
- Chemical properties are identical, because chemistry depends on the electron arrangement, which is the same for all isotopes of an element.
- Physical properties differ slightly, because they depend on mass - heavier isotopes have greater density and diffuse/effuse more slowly.
Because a real sample is a mixture of isotopes, we use a weighted average mass called the relative atomic mass :
is measured on the scale where one carbon-12 atom is defined as exactly , so it is a ratio with no units. This is why periodic-table values like are not whole numbers - they reflect the mix of isotopes, weighted by abundance, not the mass of any single atom.
Mass spectrometryHL
A mass spectrometer measures the masses and abundances of the particles in a sample, allowing the relative atomic mass of an element to be found experimentally. The main stages are:
- Ionisation - atoms or molecules are converted to positive ions (commonly by knocking off electrons).
- Acceleration - the ions are accelerated by an electric field.
- Deflection/separation - ions are separated according to their mass-to-charge ratio (); lighter ions (smaller ) are deflected more.
- Detection - the detector records the relative abundance of ions at each value.
The result is a mass spectrum: a graph of relative abundance against . For singly charged ions (), the value equals the relative mass of the ion, so each isotope gives a separate peak.
To find , take the values as the isotopic masses and combine them with the abundances:
Mass spectrometry both proves the existence of isotopes (multiple peaks for one element) and gives the data needed to calculate . A characteristic example is bromine, whose two isotopes of near-equal abundance give an close to .
Formulae
To find neutrons from the mass number and atomic number . Constructed by the student; NOT in the data booklet.
Weighted-mean calculation of relative atomic mass from isotopic masses and their abundances. If abundances are percentages they sum to , so divide by ; if they sum to , the denominator is . Constructed by the student; NOT in the data booklet.
The form used when abundances are given as percentages, e.g. from a mass spectrum. (HL questions often supply the spectrum.) Constructed by the student; NOT in the data booklet.
Definitions
- Atomic (proton) number, Z
- The number of protons in the nucleus of an atom; it defines which element the atom is and equals the number of electrons in a neutral atom.
- Mass number, A
- The total number of protons and neutrons (nucleons) in the nucleus of an atom.
- Isotopes
- Atoms of the same element that have the same number of protons but different numbers of neutrons, and therefore different mass numbers.
- Ion
- A charged particle formed when an atom (or group of atoms) gains or loses electrons, giving it more or fewer electrons than protons.
- Relative atomic mass, Ar
- The weighted average mass of the atoms of an element compared with 1/12 the mass of a carbon-12 atom; a dimensionless ratio.
- Relative isotopic mass
- The mass of a single isotope of an element compared with 1/12 the mass of a carbon-12 atom; numerically close to that isotope's mass number.
- Mass-to-charge ratio (m/z)HL
- The quantity a mass spectrometer measures for each ion: its mass divided by its charge; for singly charged ions m/z equals the relative mass of the ion.
Worked examples
(SL) An ion has the symbol . State the number of protons, neutrons and electrons it contains.
- 1The atomic number Z = 20 (bottom number), so there are 20 protons.
- 2The mass number A = 40 (top number), so neutrons = A - Z = 40 - 20 = 20.
- 3The 2+ charge means the atom has lost 2 electrons relative to the neutral atom.
- 4Neutral Ca has 20 electrons, so Ca2+ has 20 - 2 = 18 electrons.
Answer: 20 protons, 20 neutrons and 18 electrons.
(SL) Chlorine consists of 75.0% and 25.0% . Calculate the relative atomic mass of chlorine.
- 1Use the weighted-average formula with abundances as percentages.
- 2Ar = (35 x 75.0/100) + (37 x 25.0/100).
- 3= (35 x 0.750) + (37 x 0.250) = 26.25 + 9.25.
- 4= 35.50.
Answer: (no units).
(HL) The mass spectrum of an element X shows two peaks: m/z = 63 at 69.0% abundance and m/z = 65 at 31.0% abundance. The ions are singly charged. Calculate Ar and identify X.HL
- 1For singly charged ions, m/z equals the relative isotopic mass, so the isotopes have masses 63 and 65.
- 2Ar = (63 x 69.0/100) + (65 x 31.0/100).
- 3= (63 x 0.690) + (65 x 0.310) = 43.47 + 20.15.
- 4= 63.62, which rounds to 63.6.
- 5An Ar of about 63.6 with isotopes of mass 63 and 65 matches copper (Cu), whose accepted Ar is 63.55.
Answer: . The element is copper, Cu.
Common mistakes
- ×Confusing mass number with relative atomic mass: the mass number A is a whole-number count of protons + neutrons for a single isotope, while Ar is a weighted average that is usually not a whole number.
- ×Changing the number of protons when forming an ion. Only electrons are gained or lost; the proton number (and therefore the element) stays the same.
- ×Saying isotopes have different chemical properties. They have identical chemistry (same electrons); only their physical properties (mass-dependent) differ slightly.
- ×(HL) Treating raw mass-spectrum abundances as if they were already fractions: if abundances are percentages, divide by 100 (or divide by the total) before taking the weighted mean.
Exam tips
- ✓In the nuclide symbol , the top number is the mass number and the bottom is the atomic number; read neutrons as , not directly from the symbol.
- ✓For ion electron counts, start from the neutral atom (electrons = Z) then add electrons for a negative charge or subtract for a positive charge.
- ✓When calculating , never forget to divide by the total abundance (100 for percentages); a missing division is the most common arithmetic slip.
- ✓(HL) Read a mass spectrum carefully: the x-axis is (not mass), and you may assume singly charged ions so that equals the relative isotopic mass.